The University of Chicago
Department of Pediatrics, Section of Hematology/Oncology
900 East 57th Street, KCBD 5121
Chicago, IL 60637-1234
Office: (773) 702-5960
Fax: (773) 834-1329
Email: xyang2 at uchicago.edu

 

Bio-informatics Tools

2009
• R-codes for microRNA-gene co-expression module identification from
transcriptomic profiles. (Code Author)
linkage


2009
• PGnet, an algorithm based on genes associated to known biological mechanisms to derive mechanism-anchored expression profiles that can accurately predict disease outcome. (Code Author)
linkage


2010
• R-codes for "IMRE" algorithm to predict microRNA regulation profiling using
mRNA expression profiling. (Code Author)
linkage


2011
• GO-Module, an online tools for hierarchical optimization of enriched Gene
Ontology terms. (Code Co-Author)
linkage


2012
• R-codes for “FAIME” algorithm, to predict functional analysis of individual
transcriptomic profiles. (Code Author)
linkage


2015
• Bioconductor package seq2pathway: a novel tool for functional gene-set analysis
of next-generation sequencing data. (Corresponding Author)
linkage


2015
• Bioconductor package seq2pathway.data: A supporting data for the seq2patheway
package. It includes modified gene sets from MsigDB and org.Hs.eg.db,
as well the gene locus definitions from GENCODE project. (Corresponding Author)
linkage


• Collaboration Data Shareing
cds.rds

 

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