S Vaikuntanathan and C. Jarzynski, Escorted Free Energy Simulations: Improving Convergence by Reducing Dissipation, PRL, 100, 109601, 2008
S Vaikuntanathan and C. Jarzynski, Dissipation and Lag in Irreversible processes, EPL, 85, 600005, 2009
J. M. Horowitz and S.Vaikuntanathan, Nonequilibrium Detailed Fluctuation Theorem for Repeated Discrete Feedback, PRE, 82, 061120, 2010
D. D. L. Minh and S. Vaikuntanathan, Density-Dependent Analysis of Nonequilibrium Paths Improves Free Energy Estimates II. A Feynman-Kac Formalism, JCP, 134, 034117, 2011
S Vaikuntanathan and C. Jarzynski, Escorted Free Energy Simulations, JCP, 134, 054107, 2011
S Vaikuntanathan and C. Jarzynski, Modeling Maxwell’s demon with a microcanonical Szilard engine, PRE, 83, 061120, 2011.
S. Vaikuntanathan, P. R. Shaffer, P. L. Geissler “Adsorption of solutes at liquid-vapor interfaces: Insights from lattice gas models”, Faraday Discuss.,160,63-74, 2012
S. Vaikuntanathan, T. Gingrich, P. L. Geissler “Dynamic phase transitions in simple driven kinetic networks”, Phys. Rev. E. 89, 062108, 2014
S. Vaikuntanathan, P. L. Geissler “Putting water on a lattice : The importance of long wavelength density fluctuations in theories of hydrophobic and interfacial phenomena”, Phys. Rev. Lett. 112, 020603, 2014.
T. Gingrich, S. Vaikuntanathan, P. L. Geissler “Heterogeneity-induced large deviations in activity and (in some cases) entropy production”, accepted Phys. Rev. E.
T. Gingrich, G. M. Rokstoff, S. Vaikuntanathan, P. L. Geissler “Efficiency and Large Deviations in Time-Asymmetric Stochastic Heat Engines”, accepted NJP (rapid communications)
S. Vaikuntanathan, G. M. Rokstoff, P. L. Geissler “A minimal coarse-grained model of water ”, in preparation (draft available on request).
J. S. Landy, S. Vaikuntanathan, A. Hudson, P. L. Geissler “Relationship between principal Gaussian models of solvation”, in preparation,(draft available on request).
S. Vaikuntanathan, C. Jarzynski “Efficient Estimation of Solvation Free Energies in Water using Targeted Free Energy Perturbation”, in preparation.
S. Vaikuntanathan, P. L. Geissler “Anions at liquid-vapor interfaces: The influence of capillary fluctuations on interfacial solvation. ”, in preparation.