Bio-informatics Tools
2009
• R-codes for microRNA-gene co-expression module identification from
transcriptomic profiles. (Code Author)
linkage
2009
• PGnet, an algorithm based on genes associated to known biological mechanisms to derive mechanism-anchored expression profiles that can accurately predict disease outcome. (Code Author)
linkage
2010
• R-codes for "IMRE" algorithm to predict microRNA regulation profiling using
mRNA expression profiling. (Code Author)
linkage
2011
• GO-Module, an online tools for hierarchical optimization of enriched Gene
Ontology terms. (Code Co-Author)
linkage
2012
• R-codes for “FAIME” algorithm, to predict functional analysis of individual
transcriptomic profiles. (Code Author)
linkage
2015
• Bioconductor package seq2pathway: a novel tool for functional gene-set analysis
of next-generation sequencing data. (Corresponding Author)
linkage
2015
• Bioconductor package seq2pathway.data: A supporting data for the seq2patheway
package. It includes modified gene sets from MsigDB and org.Hs.eg.db,
as well the gene locus definitions from GENCODE project. (Corresponding Author)
linkage
• Collaboration Data Shareing
cds.rds