source
ms ( a program for generating samples under neutral models) and msHOT (for hotspots)
maxdip ( a program for estimating cross-over and gene conversion rates from diploid unphased
polymorphism data.)
maxhap ( a program for estimating cross-over and gene conversion rates from haploid (phased)
polymorphism data.)
permtest
Programs of J. Wall
misc
Two-locus sampling distributions